-- Mar 07, 1:30 pm -- The problems with our server file system have returned. We will keep you updated as we investigate, but there may be some downtime as we work to fix the issue. Thank you, in advance, for your patience.
Blog post: Java 7 update 51 blocks GenePattern visualizers
-- Mar 05 -- HAPSEG, ABSOLUTE, ABSOLUTE.summarize, & ABSOLUTE.review released: Estimate tumor purity/ploidy, absolute copy number, CN segments. Also available from the production repository.
-- Feb 28 -- Cufflinks.cuffdiff beta: brings an improved UI for conditions and a pass-through parameter for additional command-line arguments.
-- Feb 21 -- TopHat (2.0.9) beta, updated for advanced users: pass additional TopHat options through to the command line.
-- Feb 14 -- Cufflinks and Cufflinks.cuffcompare (2.0.2) updated for advanced users: pass additional Cufflinks options through to the command line.
-- Feb 12 -- TopHat (2.0.9) now in beta: Fusion Mapping & 50+ hosted indexes (with more to come)
-- Feb 10 -- Chicken and Rhesus macaque genomes hosted in GenePattern for RNA-Seq tools. Cow, dog, human, E. Coli, and Drosophila updated.